Full list from pubmed
Full list from Google Scholar
*Denotes equal contribution
# corresponding author

• Warren RB, Weiss A, Fedling J, Sommer MOA, Garcet S, Krueger JG ‘Orismilast, a Potent and Selective PDE4B/D Inhibitor, Reduces Protein Levels of Key Disease Driving Cytokines in the Skin of Patients With Plaque Psoriasis’ Experimental Dermatology (2025) DOI: 10.1111/exd.70153 – Download link
• Duffey, HE, Hedin KA, Gelli HP, Vaaben TH, Sommer MOA ‘Genomic and phenotypic comparison of Saccharomyces cerevisiae and 1 Saccharomyces boulardii’ BioRxiv (2025) DOI: 10.1101/2025.09.08.674931 – Download link
• Fan Y, Lyu L, Uribe RV, Zhang W, Bongers M, Koulouktsis A, Yang M Sommer MOA et.al ‘Polypeptides synthesized by common bacteria in the human gut improve rodent metabolism’ Nature Microbiology (2025) DOI: 10.1038/s41564-025-02064-x – Download link 
• Lodies TP, Das AF, Frimodt-Møller N, Gupta K, Rodvold KA, Henriksen AS, Sommer MOA, Wegenlehner F, Kaye KS ‘Pivmecillinam for Treatment of Uncomplicated Urinary Tract Infection: New Efficacy Analysis’ Clincal Infectious Diseases (2025) DOI:10.1093/cid/ciaf280 – Download link
• Lok J, Chen C, Iannone V, Babu AF, Lo WKK, Uribe RV, Vaaben TH, Kettunen M, Savolainen O, Schwab U, Sommer MOA, Hanhineva K, Kolehmainen M, El-Nezami H, Gomez-Gallego C ‘Advanced Microbiome Therapeutics Accelerate MASLD Recovery by Restoring Intestinal Microbiota Equilibrium and the Gut-Liver Axis in a Mouse Model’ Journal of Agricultural and Food Chemistry (2025) DOI: 10.1021/acs.jafc.5c01674 – Download link
• Serrano T, Meramo S, Bjørn A, Hauschild M, Sukumara S, Sommer MOA ‘Communicating the environmental impacts of individual actions in the context of Planetary Boundaries’ Sustainable Production and Consumption (2025) DOI: 10.1016/j.spc.2025.03.021 – Download link
• Silverberg JI, Eichenfield LF, Blauvelt A, Irvine AD, Guttman-Yassky E, Langley RG, Warren RB, French LE, Felding J, Weiss A, Pedersen CB, Jensen ML, Carlsson A, Sommer MOA, Kjoeller K, Simpson EL ‘Orismilast, a phosphodiesterase 4B/D inhibitor, in moderate-to-severe atopic dermatitis: efficacy and safety from a multicentre randomized placebo-controlled phase IIb dose ‘ British Journal of Dermatology (2025) DOI:10.1093/bjd/ljae507 – Download link
• Gelli HP, Uribe RV, Buchley ST, Andersen JT, Sommer MOA’Advanced microbiome therapeutics for oral delivery of peptides and proteins: Advances, challenges, and opportunities’ Advanced Drug Delivery Reviews (2025)  DOI: 10.1016/j.addr.2025.115603 – Download link
• Iannone V, Vaittinen M, Gomez-Gallego C, Mikkonen S, Ok J, D’Auria G, Uribe RV, Tikkanen I, Sommer MOA, El-Nezami H, Kolehmainen M ‘The effect of aldafermin expressing-Escherichia coli Nissle 1917 along with dietary change on visceral adipose tissue in MASLD mouse model’ Internationa Journal of Obesity (2025) DOI: 10.1038/s41366-025-01774-w – Download link
• Vaaben TH, Lützhøft DO, Koulouktsis, Dawoodi IM, Stavnsbjerg CS, Kvich L, Gögenur I, Uribe RV, Sommer MOA ‘ Modulating tumor immunity using advanced microbiome therapeutics producing an indole metabolite’ EMBO Reports (2025) DOI: 10.1038/s44319-025-00386-9 – Download link
• Warren RN. Weoss A. Felding J, Sommer MOA ‘Population Pharmacokinetic-Pharmacodynamic (popPK/PD) Relationship of Orismilast, A Potent and Selective PDE4B/D Inhibitor, in Atopic Dermatitis’ Dermatology and Therapy (2025)  DOI: 10.1007/s13555-025-01371-9 – Download link
• Kay KS, Santerre Henriksen A, Sommer MOA, Frimodt-Møller N ‘Safety and tolerability of pivmecillinam during more than four decades of clinical experience: a systematic review’ Clinical Infectious Diseases (2025) DOI:10.1093/cid/ciae621 – Download link
• Humphrey TJL, Qian W, Chen-Xu M, Dowling F, Jellingsø M, Sørensen P, Jensen ML, Callesen AW, Sommer MOA, Heimstra TF, Smith RM et.al. ‘Prophylaxis for renal patients at risk of COVID-19 infection: results from the intranasal niclosamide randomised, double blinded, placebo controlled arm of the PROTECT-V’ BMC infectious diseases (2025) DOI:10.1186/s12879-025-10584-4 – Download link
• Armetta J, Li S S, Vaaben T H, Vazquez-Uribe R & Sommer MOA  ‘Metagenome-guided culturomics for the targeted enrichment of gut microbes’ Nature Communications, (2025) 16(1), Article 663. DOI:10.1038/s41467-024-55668-y –Download link
• Silverberg J, Eichenfield L, Blauvelt A, Irvine AD, Langley R, Guuman E, Warren R, French L, Pedersen CB, Carlsson A, Jensen ML, Sommer MOA, Kjeoller K, SEimpson E ‘693 – Efficacy and safety of orismilast, a potent PDE4B/D inhibitor, in adults with moderate-to-severe atopic dermatitis: a phase 2b randomized, double-blind, placebo-controlled clinical trial (ADESOS)’ British Association of Dermatologists (2024) DOI: 10.10193/bjd/ljae266.067 – Download link 
• Vazquez-Uribe R, Hedin KA, Licht TR, Nieuwdorp M, Sommer MOA# ‘Advanced microbiome therapeutics as a novel modality for oral delivery of peptides to manage metabolic diseases’ (2024) Trends in Endocrinology and Metabolism – DOI:10.1016/j.tem.2024.04.021 – Download link
• Mavros CF, Bongers M, Neergaard FBF, Cusimano F, Sun Y, Kaufman A, Richardson M, Kammler S, Kristensen M, Sommer MOA, Wang HH ‘Bacteria Engineered to Produce Serotonin Modulate Host Intestinal Physiology’ (2024) ACS Synthetic Biology – DOI:10.1021/acssynbio.4c00453 – Download link
• Munkler LP, Mohamed ET, Vazquez-Uribe R, Visby Nissen V, Rugbjerg P, Worberg A, Woodley JM, Feist AM, Sommer MOA# ‘Genetic heterogeneity of engineered Escherichia coli Nissle 1917 strains during scale-up simulation’ (2024) Metabolic Engineering – DOI:10.1016/j.ymben.2024.08.001 – Download link
• Model Lok J, Iannone V, Gomez-Gallego C, Vazquez-Uribe R, Sommer MOA, Kolehmainen M, El-Nezami H ‘Engineered Escherichia coli Nissle 1917 Expressing IGF1 and FGF19 Reduce Liver Fat Accumulation and Restore Microbial Equilibrium in a Metabolic Dysfunction-Associated Steatotic Liver Disease Mice Model’ Proceedings (2024) DOI:10.3390/proceedings2023091402 – Download link
• Gencay YE, Jasenskyte C, Robert S, Semsey S, Clube J, Grøndahl C, Haaber KJ, van der Helm E, Sommer MOA ‘Engineered phage with antibacterial CRISPR-Cas selectively reduce E.coli burden in mice’ (2024) Nature Biology – DOI:10.1038/s41587-023-07159-y – Download link
• Rosenkilde CEH, Lützhoeft DO, Vazquez-Uribe R, Sommer MOA# ‘Heterologous expression and antimicrobial potential of class II bacteriocins’ (2024) Gut Microbes – DOI:10.1080/19490976.2024.2369338 – Download link
• Dimopoulou C, Guerra PR, Mortensen MS, Kristensen KA, Pedersen M, Bahl MI, Sommer MOA, Licht TR, Laursen MF ‘Potential of using an engineered indole lactic acid producing Escherichia coli Nissle 1917 in a murine model of colitis’ (2024)Scientific reports – DOI:10.1038/s41598-024-68412-9 – Download link
• Josephs-Spaulding J, Rajput A, Hefner Y, Szubin R, Balasubramanian C, Li G, Zielinski DC, Jahn L, Sommer MOA, Phaneuf P, Palsson BO ‘Reconstructing the Transcriptional Regulatory Network of Probiotic L. reuteri is Enabled by Transcriptomics and Machine Learning’ (2024)American Society for Microbiology – DOI:10.1128/msystems.01257-23 – Download link
• Gelli HP, Hedin KA, Laursen MF, Uribe RV, Sommer MOA ‘Enhancing intestinal absorption of a macromolecule through engineered probiotic yeast in the murine gastrointestinal tract’ (2024) Trends in – DOI:10.1016/j.tibtech.2024.10.019 – Download link
• Hedin KA, Mirhakkak MH, Vaaben TH, Sands C, Pedersen M, Baker A, Vazquez-Uribe R, Schäuble S, Panagiotou G, Wellejus A, Sommer MOA# ‘Saccharomyces boulardii enhances anti-inflammatory effectors and AhR activation via metabolic interactions in probiotic communities’ (2024) ISME jounal – DOI:10.1093/ismejo/wrae212 – Download link
• van Dam L, Cruz-Morales P, Rodriguez Valerón N, Calheiros de Carvalho A, Prado Vásquez D, Lübke M, Kloster Pedersen L, Munk R, Sommer MOA# ‘GastronOmics: Edibility and safety of mycelium of the oyster mushroom Pleurotus ostreatus’ (2024) Current Research in Food Science – DOI:10.1016/j.crfs.2024.100866 – Download link
• de Oliveira Lino FS, Garg S, Li SS, Misiakou MA, Kang K, Vale da Costa BL, Beyer-Pedersen TS, Giacon TG, Basso TO, Panagiotou G, Sommer MOA,# ‘Strain dynamics of contaminating bacteria modulate the yield of ethanol biorefineries’ (2024) Nature Communications – DOI:10.1038/s41467-024-49683-2 – Download link
• Durmusoglu, D, Halle DJ, Al’Albri IS, Day K, Sands C, Clark A, San-Miguel A, Vazquez-Uribe R, Sommer MOA, Crook NC ‘Programming Probiotics: Diet-Responsive Gene Expression and Colonization Control in Engineered S. boulardii’ (2023)ACS Synthetic Biology – DOI: 10.1021/acssynbio.4c00145 – Download link
• Gencay Y.E., Jasinkyte D, Robert C, Semsy S, Martinex V, Pedersen AØ …. Sommer MOA ‘Engineered phage with antibacterial CRISPR-Cas selectively reduce E.boli  burden in mice’ (2024) Nature Biology, 42, 265-274 DOI:10.1038/s41587-023-01759-y – Download link
• Lachowicz JC, Lennox-Hvenekilde D, Myling-Petersen N, Salomonsen B, Verkleij G, Acevedo-Rocha CG, Caddell B, Gronenberg LS, Also SC, Sommer MOA, Genee HJ, Grove T ‘Discovery of a Biotin Synthase That Utilizes an Auxiliary 4Fe-5S Cluster for Sulfur Insertion’ (2024)American Chemical Society – DOI:10.1021/jacs.3c05481 – Download link
• Sands C, Hedin KA, Vazquez-Uribe V, Sommer MOA ‘Saccharomyces boulardii promoters for control of gene expression in vivo’ (2024)Microbial Cell Factories – DOI:10.1186/s12934-023-02288-8 – Download link
• Warren RB, French LE, Blauvelt A, Langley RG, Egeberg A, Mrovietz U, Hunter HJA, Gooerham M, Soerensen P, Andres P, Sommer MOA, Carlsson A, Kjoeller KD, Strober BE ‘Orismilast in moderate-to-severe psoriasis: Efficacy and safety from a 16-week, randomized, double-blinded, placebo-controlled, dose-finding, and phase 2b trial (IASOS)’ (2024)Journal of American Academy of Dermatology – DOI:10.1016/j.jaad.2023.11.005 – Download link
• Blauvelt A, Langley RG, Gordohn KB, Silverberg JI, Eýerich K,Sommer MOA, Felding J, Warren RB ‘Next Generation PDE4 Inhibitors that Selectively Target PDE4B/D Subtypes: A Narrative Review’ (2023)Dermatology and Therapy – DOI:10.1007/s13555-023-01054-3 – Download link
• Iannone V, Babu AF, Lok J, Gomez-Gallego C, Vazquez-Uribe V, Vaaben TH, Bongers M,Sommer MOA, Kolehmainen M et.al. ‘Changes in liver metabolic pathways demonstrate efficacy of the combined dietary and microbial therapeutic intervention in MASLD mouse model’ (2023)Molecular Metabolism – DOI:10.1016/j.molmet.2023.101823 – Download link
• Babu AF, Iannove V, Gomez-Callego C, D’Auria G, Vazquez-Uribe V, Pihlajamaki J, Sommer MOA, Hanhineva K, El-Nezami H, Kohlemainen M ‘An integrated understanding of the metabolic benefits of a novel double-targeted genetically engineered probiotic expressing aldafermin intervention with dietary change on NAFLD'(2023)Atherosclerosis – DOI:10.1016/j.atherosclerosis.2023.06.772 – Download link
• Tumas S, Meldgaard RS, Vaaben TH, Suarez Hernandez S, Rasmussen AT, Vazquez-Uribe V, Hadrup SK, Sommer MOA ‘Engineered E. coli Nissle 1917 for delivery of bioactive IL-2 for cancer immunotherapy’ (2023)Nature Research – DOI:10.1038/s41598-023-39365-2 – Download link
• Weiss A, Bischof RJ, Landersdorfer B, Nhuyen TH, Davise A, Ibrahim J, Wynne P, Ditzinger G, Montgomery AB, Meeusen E, MaIntoch MP, Sommer MOA ‘Single-dose pharmacokinetics and lung function of nebulized niclosamide ethanolamine in sheep’ (2023)Pharmaduetical Research – DOI:10.1007/s11095-023-03559-0 – Download link
• Eliodório KP, Cunha GCGE, Lino FSO, Sommer MOA#, Gombert AK, Giudici R, Basso TO ‘Physiology of Saccharomyces cerevisiae during growth on industrial sugar cane molasses can be reproduced in a tailor-made defined synthetic medium’ (2023)Scientific Reports – DOI:10.1038/s41598-023-37618-8 – Download link
• Seelbinder B, Lohinai Z, Vazquez-Uribe R, Brunke S, Chen X, Mirhakkak M, Lopez-Escalera S, Dome B, Megyesfalvi Z, Berta J, Galffy G, Dulka E, Wellejus A, Weiss GJ, Bauer M, Hube B, Sommer MOA, Panagiotou G# ‘Candida expansion in the gut of lung cancer patients associates with an ecological signature that supports growth under dysbiotic conditions’ (2023)Nature Communications – DOI:10.1038/s41467-023-38058-8 – Download link
• Gencay YE, Jasinskytė D, Robert C, Semsey S, Martínez V, Petersen AØ, Brunner K, de Santiago Torio A, Salazar A, Turcu IC, Eriksen MK, Koval L, Takos A, Pascal R, Schou TS, Bayer L, Bryde T, Johansen KC, Bak EG, Smrekar F, Doyle TB, Satlin MJ, Gram A, Carvalho J, Jessen L, Hallström B, Hink J, Damholt B, Troy A, Grove M, Clube J, Grøndahl C, Haaber JK, van der Helm E, Zdravkovic M, Sommer MOA# ‘Engineered phage with antibacterial CRISPR-Cas selectively reduce E. coli burden in mice’ (2023)Nature Biotechnology – DOI:10.1038/s41587-023-01759 – Download link
• Dimopoulou C, Bongers M, Pedersen M, Bahl MI, Sommer MOA# ‘An engineered Escherichia coli Nissle 1917 increase the production of indole lactic acid in the gut’ (2023)FEMS Microbiology Letters – DOI:10.1093/femsle/fnad027 – Download link
• Hedin KA, Kruse V, Uribe RV, Sommer MOA# ‘Biocontainment strategies for in vivo applications of Saccharomyces boulardii’ (2023)Frontiers in Bioengineering and Biotechnology – DOI:10.3389/fbioe.2023.1136095 – Download link
• Lennen RM, Lim HG, Jensen K, Mohamme ET, Phaneuf PV LJ, Sommer MOA et.al. ‘Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals’ (2023)Metabolic Engineering – DOI:10.1016/j.ymben.2023.01.012 – Download link
• Jahn LJ, Rekdal VM, Sommer MOA# ‘Microbial foods for improving human and planetary health’ (2023)Cell – DOI:10.1016/j.cell.2022.12.002 – Download link
• Lennox-Hvenekilde D, Bali AP, Gronenberg LS, Acevedo-Rocha C, Sommer MOA, Genee HJ# ‘Metabolic engineering of Escherichia coli for high-level production of free lipoic acid’ (2023)Metabolic Engineering – DOI:10.1097/TP.0000000000004462 – Download link
• Weiss A, Touret F, Baronti C, Gilles M, Hoen B, Nougaiede A, de Lamballerie X, Sommer MOA# ‘Niclosamide shows strong antiviral activity in a human airway model of SARS-CoV-2 infection and a conserved potency against the Alpha (B.1.1.7), Beta (B.1.351) and Delta variant (B.1.617.2)’ (2022) PLOS One – DOI:10.101371/journal.pone.0260958 – Download link
• Silverberg JI, French LE, Warren RB, Strober B, Kjøller K, Sommer MOA, Andres P, Felding J, Weiss A, Tutkunkarda D, Skak-Nielsen T, Guttmann E# ‘Pharmacology of orismilast, a potent and selective PDE4 inhibitor’ (2022)Journal of the European Academy of Dermatology & Venereology – DOI:10.1111/jdv.18818 – Download link
• Warren RB, Strober B, Silverberg JI, Guttmmann E, Andres P, Felding J, Tutkunkardas D, Kjøller K, Sommer MOA,French LE# ‘Oral orismilast: Efficacy and safety in moderate-to-severe psoriasis and development of modified release tablets’ (2022) Journal of the European Academy of Dermatology & Venereology – DOI:10.1111/jdv.18812 – Download link
• Holst AQ, Hois J, Laursen MF, Sommer MOA, Licht TR, Bahl MI# ‘Human milk oligosaccharides induce acute yet reversible compositional changes in the gut microbiota of conventional mice linked to a reduction of butyrate levels’ (2022) Microlife – DOI:10.1093/femsml/uqac006 – Download link
• van ‘t Hof M, Mohite OS, Monk JM, Weber T, Palsson BO, Sommer MOA,# ‘High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917’ (2022) BMC Bioinformatics – DOI:10.1186/s12859-022-05108-9 – Download link
• Wismer P, Soares SA, Einarson KA, Sommer MOA,# ‘Laboratory performance prediction using virtual reality behaviometrics’ (2022) Plos One – DOI:10.1371/journal.pone.0279320 – Download link
• Vaaben H, Uribe RV, Sommer MOA,# ‘Characterization of Eight Bacterial Biosensors for Microbial Diagnostic and Therapeutic Applications’ (2022) ACS Synthetic Biology – DOI:10.1021/acssynbio.2c00491 – Download link
• Gelli HP, Uribe RV, Sommer MOA,# ‘Screening for effective cell-penetrating peptides with minimal impact on epithelial cells and gut commensals in vitro’ (2022) Frontiers in Pharmacology – DOI:10.3389/fphar.2022.1049324 – Download link
• Hedin AK, Rees VE Zhang H, Kruse V, Uribe RV, Sommer MOA# ‘Effects of broad-spectrum antibiotics on the colonisation of probiotic yeast Saccharomyces boulardii in the murine gastrointestinal tract’ (2022) Science Reports – DOI:10.1038/s41598-022-12806-0 – Download link
• Malla S, van der Helm E, Darbani, B, Wieschalka S, Förster J, Borodina I, Sommer MOA# ‘A Novel Efficient L-Lysine Exporter Identified by Functional Metagenomics’ (2022) Frontiers in Microbiology – DOI:10.3389/fmicb.2022.855736 – Download link
• Lee S-W, Tran KT, Uribe RV, Gotfredsen HC, Clausen MH Mendes BL, Montoya Bach A, Sommer MOA# ‘Identification and Optimization of Novel Small-Molecule Cas9 Inhibitors by Cell-Based High-Throughput Screening’ (2022) ACS Synthetic Biology – DOI:10.1021/acs.jmedchem.1c01834 – Download link
• Armetta J, Schantz-Klausen M, Shepelin, Uribe RV, Bahl MI, Laursen MF, Licht TR, Sommer MOA# ‘Escherichia coli Promoters with Consistent Expression throughout the Murine Gut’ (2022) ACS Synthetic Biology – DOI:10.1021/acssynbio.1c00325 – Download link
• Lagler H, Bangert C, Auint T, Österreicher Z, Nussbaumer-Pröll A, Eberl S, Weber M, Karer M, Sommer MOA, Zeitlinger M ‘Comparison of non-invasive Staphylococcus aureus sampling methods on lesional skin in patients with atopic dermatitis’ (2022) European Journal of Clinical Microbiology & Infectious Diseases – DOI:10.1007/s10096-021-04365-5 – Download link
• Lee S-W, Rugbjerg P, Sommer MOA#, ‘Exploring Selective Pressure Trade-Offs for Synthetic Addiction to Extend Metabolite Productive Lifetimes in Yeast’ (2021) ACS Synthetic Biology – DOI:10.1021/acssynbio.1c00240 – Download link
• Forsberg KJ, Schmidtke DT, Werther R, Uribe RV, Hausman D, Sommer MOA, Stoddard BL Kaiser BK, Malik HS ‘The novel anti-CRISPR AcrIIA22 relieves DNA torsion in target plasmids and impairs SpyCas9 activity’ (2021) PLoS Biology – DOI:10.1371/journal.phio.3001428 – Download link
• Uribe MV, Rathmer C, Jahn LJ, Ellabaan MMH, Simone L, Sommer MOA#, ‘Bacterial resistance to CRISPR-Cas antimicrobials’ (2021) Science Reports – DOI:10.1038/s41598-021-96735-4 – Download link
• Ni Y, Lohinai Z, Heshiki Y, Dome B, Moldvay J, Dulka E, Galffy G, Berta J, Weiss G, Sommer MOA#, Panagiotou G ‘Distinct composition and metabolic functions of human gut microbiota are associated with cachexia in lung cancer patients’ (2021) ISME – DOI:10.1038/s41396-021-00998-8 – Download link
• Ellabaan MMH, Munck C, Porse A, Imamovic L, Sommer MOA#, ‘Forecasting the dissemination of antibiotic resistance genes across bacterial genomes’ (2021) Nature Communication – DOI:10.1038/s41467-021-022757-1 – Download link
• Rugbjerg P, Dyerberg ASB, Quainoo S, Munck C, Sommer MOA#, ‘Short and long-read ultra-deep sequencing profiles emerging heterogeneity across five platform Escherichia coli strains’ (2021) Metabolic Engineering – DOI:10.1016/j.ymben.2021.11.006 – Download link
• Wismer P, Lopez Cordoba A, Baceviciute S, Clauson-Kaas F, Sommer MOA#, ‘Immersive virtual reality as a competitive training strategy for the biopharma industry’ (2021) Nature Biotechnology – DOI:10.1038/s41587-020-00784-5 – Download link
• Senne de Oliveira Lino F, Bajic, D, Villa JCC, Sanchez A, Sommer MOA#, ‘Complex yeast-bacteria interactions affect the yield of industrial ethanol fermentation’ (2021) Nature Communications – DOI:10.1038/s41467-021-21844-7 – Download link
• Jahn LJ, Simon D, Jensen M, Bradshaw C, Ellabaan MMH, Sommer MOA#, ‘Compatibility of evolutionary responses to constituent antibiotics drive resistance evolution to drug pairs’ (2021) Molecular Biology and Evolution – DOI:10.1093/molbev/msab006 – Download link
• Mirhakkak MH, Schäuble S, Klassert TE, Brunke S, Brandt P, Loos D, Uribe RV, Senne de Oliveira Lino F, Ni Y, Vylkova S, Slevogt H, Hube B, Weiss GJ, Sommer MOA#, Panagiotou G,’Metabolic modeling predicts specific gut bacteria as key determinants for Candida albicans colonization levels’ (2020) ISME – DOI:10.1038/s41396-020-00848-z – Download link
• Rodriguez de Evgrafov MC, Faza M, Asimakopoulos K, Sommer MOA#, ‘Systematic Investigation of Resistance Evolution to Common Antibiotics Reveals Conserved Collateral Responses across Common Human Pathogens’ (2020) Antimicrob Agents Chemother – DOI:10.1128/AAC.01273-20 – Download link
• Seelbinder B, Chen J, Brunke S, Vazquez-Uribe R, Santhaman R, Meyer AC, de Oliveira Lino FS, Chan KF, Loos D, Imamovic L, Tsang CC, Lam RP, Sridhar S, Kang K, Hube B, Woo PC, Sommer MOA, Panagiotou G#, ‘Antibiotics create a shift from mutualism to competition in human gut communities with a longer-lasting impact on fungi than bacteria’ (2020) Microbiome – DOI:10.1186/s40168-020-00899-6 – Download link
• D’Ambrosio V, Dore E, Di Blasi R, van den Broek M, Sudarsan S, Horst JT, Ambri F, Sommer MOA, Rugbjerg P, Keasling JD, Mans R, Jensen MK#, ‘Regulatory control circuits for stabilizing long-term anabolic product formation in yeast’ (2020) Metabolig Engineering – DOI:10.1016/j.ymben.2020.07.006 – Download link
• Weiss A, Jellingsø M, Sommer MOA#, ‘Spatial and temporal dynamics of SARS-CoV-2 in COVID-19 patients: A systematic review and meta-analysis’ (2020) EbioMedicine – DOI:10.1016/j.ebiom.2020.102916 – Download link
• Ahmed MN, Abdelsamad A, Wassermann T, Porse A, Back J, Sommer MOA, Køiby N, Ciofu O#, ‘The evolutionary trajectories of P. aeruginosa in biofilm and planktonic growth modes exposed to ciprofloxacin: beyond selection of antibiotic resistance’ (2020) NPF Biofilms Microbiomes – DOI:10.1038/s41522-020-00138-8 – Download link
• Moeller TSJ, Liu G, Hartman HB, Rau MH, Mortensen S, Thamsborg K, Johansen AE, Sommer MOA#, Guardabassi L, Poolman MG,m Olsen JE ‘Global responses to oxytetracycline treatment in tetracycline-resistant Escherichia coli’ (2020) Scientific Report – DOI:10.1038/s41598-020-64995-1 – Download link
• Bali AP, Lennox-Hvenekilde D, Myling-Petersen N, Buerger J, Salomonsen B, Gronenberg LS, Sommer MOA#, Genee HJ ‘Improved biotin, thiamine, and lipoic acid biosynthesis by engineering the global regulator IscR’ (2020) Metabolic Engineering – DOI:10.1016/j.ymben.2020.03.005 – Download link
• Bongers M, Perez-Gil J, Hodson MP, Schrübbers L, Wulff F, Sommer MOA#, Nielsen LK, Vickers CE ‘Adaptation of hydroxymethylbutenyl diphosphate reductase enables volatile isoprenoid production’ (2020) Elife – DOI:10.7554/eLife.48685.Elife – Download link
• Porse A, Jahn LJ, Ellabaan MMH, Sommer MOA#, ‘Dominant resistance and negative epistasis can limit the co-selection of de novo resistance mutations and antibiotic resistance genes’ (2020) Nature Communications – DOI:10.10138/s41467-020-15080-8 – Download link
• Heshiki Y, Uribe RV, Li J, Ni Y, Quainoo S, Imamovic L, Li J, Sørensen M, Chow BKC, Weiss GJ, Xu A, Sommer MOA#, Panagiotou G ‘Predictable modulation of cancer treatment outcomes by the gut microbiota’ (2020) Microbiome – DOI:10.1186/s40168-020-00811-2 – Download link
• Uribe RV, van der Helm E, Misiakou MA, Lee SW, Kol S, Sommer MOA, ‘Discovery and Characterization of Cas9 Inhibitors Disseminated across Seven Bacterial Phyla’ (2019) Cell Host Microbe – DOI:10.1016/j.chom.2019.09.005 – Download link
• Rugbjerg P, Sommer MOA, ‘Overcoming genetic hetorogeneity in industrial fermentations’ (2019) Nature Biotechnology – DOI:10.1038/s41587-019-0171-6 – Download link
• Prodan A, Sommer MOA, Nieuwdrop M ‘Rapid diagnosis of lung infections’ (2019) Nature Biotechnology – DOI:10.1038/s41587-019-0174-3 – Download link
• Li J, Rettedal EA, Buerger J, van der Helm E, Ellabaan M, Panagiotou G, Sommer MOA ‘Antibiotic Treatment Drives the Diversification of the Human Gut Resistome’ (2019) Genomics Proteomics Bioinformatics – DOI:10.1016/j.gpb.2018.12.003 – Download link
• Buerger J, Gronenberg LS, Genee HJ, Sommer MOA ‘Wiring cell growth to product formation’ (2019) Current Opion Biotechnology – DOI:10.1016/j.copbio.2019.02.014 – Download link
• Klausen MS, Jespersen MC, Nielsen H, Jensen KK, Jurtz VI, Soenderby CK, Sommer MOA, Winther O, Nielsen M, Petersen B, Marcateli P ‘NetSurfP -2.0: Improv ed prediction of protein structural features by integrated deep learning’ (2019) Proteins – DOI:10.1002/prot.25674 – Download link
• Uribe RV*, van der Helm E*, Misiakou M-A*, Lee S-A, Kol S,Sommer MOA ‘Discovery and Characterization of Cas9 Inhibitors Disseminated across Seven Bacterial Phyla’ (2019) Cell Host & Microbe – DOI:10.1016/j.chom.2019.01.003 – Download link
• Rosenkilde CHE, Munck C, Porse A, Linkevicius M, Andersson DI, Sommer MOA ‘Collateral sensitivity constrains resistance evolution of the CTX-M-15 β-lactamase’ (2019) Nature Communications – DOI:10.1038/s41467-019-08529-y – Download link
• Lino FSdO, Basso TO,Sommer MOA ‘A synthetic medium to simulate sugarcane molasses’ (2018) Biotechnology for Biofuels – DOI:10.1186/s13068-018-1221-x – Download link
• Kang K, Ni Y, Li J, Imamovic L, Sarkar C, Kobler MD, Heshiki Y, Zheng T, Kumari S, Wong JCY, Archna A, Wong CWM, Dingle C, Denizen S, Baker DM, Sommer MOA, Webster CJ, Panagiotou G. ‘The environmental Exposures and Inner- and Intercity Traffic Flows of the Metro System May Contribute to the Skin Microbiome and Resistome’ (2018) Cell Reports – DOI:10.1016/j.celrep.2018.06.109 – Download link
• van der Helm, E., Genee, H.J., Sommer MOA ‘The evolving interface between synthetic bilogy and functional metagenomics’ (2018) Nature Chemical Biology – DOI:10.1038/s41589-018-0100-x – Download link
• Crofts TS, Wang B, Spivak A, Gianoulis TA, Forsberg KJ, Gibson MK, Johnsky LA, Broomall SM, Rosenzweig CN, Skowronski EW, Gibbons HS, Sommer MOA, Dantas G ‘Shared strategies for β-lactam catabolism in the soil microbiome’ (2018) Nature Chemical Biology – DOI:10.1038/s41589-018-0052-1 – Download link
• Ahmed MN, Porse A, Sommer MOA, Høiby N, Ciofu O. ‘Evolution of Antibiotic Resistance in Biofilm and Planktonic Pseudomonas aeruginosa Populations Exposed to Subinhibitory Levels of Ciprofloxacin’ (2018) American Society for Microbiology – DOI:10.1128/AAC.00320-18 – Download link
• Jahn LJ, Porse A, Munck C, Simon D, Volkova S, Sommer MOA. ‘Chromosomal barcoding as a tool for multiplexed phenotypic characterization of laboratory evolved lineages’ (2018) Nature Scientific reports – DOI:10.1038/141598-018-25201-5 – Download link
• Rugbjerg P, Sarup-Lytsen K, Nagy M, Sommer MOA ‘Synthetic addiction extends the productive life time of engineered Eschedrichia coli populations’ (2018) PNAS – DOI:10.1073/pnas.1718622115 – Download link
• Bali AP, Genee HJ, Sommer MOA. ‘Directed Evolution of Membrane Transport Using Synthetic Selections’ (2018) ACS Synthetic Bioloyg – DOI:10.1021/acssynbio.7b00407 – Download link
• Rugbjerg, P., Myling-Petersen, N., Porse, A., Sarup-Lytzen, K., Sommer MOA ‘Diverse genetic error modes constrain large-scale bio-based production’ (2018) Nature Communications – DOI:10.1038/s41467-018-03232-w – Download link
• Porse, A., Schou, T.S., Munck, C., Ellabaan, M.M.H., Sommer MOA ‘Biochemical mechanisms determine the functional compatibility of heterologous genes’ (2018) Nature Communications – DOI:10.1038/s41467-018-02944-3 – Download link
• Imamovic, L., Misiakou, M-A., van der Helm, E., Panagiotou, G., Muniesa, M., Sommer MOA ‘Complete Genome Sequence of Escherichia coli Strain WG5’ (2018) Genome Announcements – DOI:10.1128/genomeA.01403-17 – Download link
• Imamovic, L., Ellabaan, M.M.H., Dantaas Machado, A.M., Citterio, L., Wulff, T., Molin, S., Johansen, H.K., Sommer MOA ‘Drug-driven Phenotypic Convergence Supports Rational Treatment Strategies of Chronic Infections’ (2018) Cell – DOI:10.1016/j.cell.2017.12.012 – Download link
• Klausen MS, Jespersen MC, Nielsen H, Jensen KK, Jurtz VI, Sønderby CK, Sommer MOA, Winther O, Nielsen M, Petersen B, Marcitili P ‘NetSurfP-2.0: improved prediction of protein structural features by integrated deep learning’ (2018) bioRxiv – DOI:10.1101/311209 – Download link
• Klausen MS, Sommer MOA ‘Parts Characterization for Tunable Protein Expression’ (2017) Methods in Molecular Biology – DOI:10.1007/978-1-14939-7295-1_1 – Download link
• Lauritsen I, Porse A, Sommer MOA, Noerholm MHH# ‘A versatile one-step CRISPR-Cas9 based approach to pladmid-curing’ (2017) Microbial Cell Factories – DOI:10.1186/s12934-017-0748-z – Download link
• Sommer MOA, Munck C, Toft-Kehler RV, Andersson DI ‘Prediction of antibiotic resistance: time for a new preclinical paradigm?’ (2017) Nature Reviews Microbiology – DOI:10.1038/nrmicro.2017.75 – Download link
• Gumpert, H, Kubicek-Sutherland, J.Z, Porse, A., Karami, N., Munck, C., Linkevicius, M., Adlerberth, I., Wold, A.E., Andersson, D.I., Sommer, MOA ‘Transfer and persistance of a multi-drug resistance plasnud ub situ of the infant gut microbiota in the abscence of antibiotic treatment’ (2017) Frontiers in Microbiology – DOI:10.3389/fmicb.2017.01852 – Download link
• Koplev S, Longden J, Ferkinghoff-Borg J, Bjerregaard MB, Cox TR, Erler JT, Pedersen JP, Voellmy F, Sommer MOA, Linding R ‘Dynamic Rearrangement of Cell States Detected by Systematic Screening og Sequential Anticancer Treatments’ (2017) Cell Reports – DOI:10.1016/j.celrep.2017.08.095 – Download link
• Crofts TS, Wang B, Spicak A, Gianoulis TA, Forsberg KJ, Gibson MK, Johnsky LA, Broomall SM, Rosenzweig CN, Skowronski EW, Gibbons HS, Sommer MOA, Dantas G ‘Draft Genome Sequences of Three Beta-Lactam-Catabolizing soil Proteobacteria’ (2017) Genome Announcements – DOI:10.1128/genomeA.00653-17 – Download link
• Cardinale S, Tueros FGF, Sommer MOA ‘Genetic-Metabolic Coupling for Targeted Metabolic Engineering’ (2017) Cell reports – DOI:10.1016/j.celrep.2017.07.015 – Download link
• Lehning CE, Siedler S, Ellabaan MMH and Sommer MOA# ‘Assecing glycolytic flux alterations resulting from genetic perturbations in E.coli using a biosensor’ (2017) Metabolic engineering – DOI:10.1016/j.ymben.2017.07.002 – Download link
• Siedler S, Khatri NK, Zsohár A, Kjærbølling I, Vogt M, Hammar P, Nielsen CF, Marienhagen J, Sommer MOA, Joensson HN ‘Development of a Bacterial Biosensor for Rapid Screening of Yeast p-Coumaric Acid Production’ (2017) ACS Synthetic Biology – DOI:10.1021/acssynbio.7b00009 – Download link
• Jiang X, Ellabaan MMH, Charusanti P, Munck C, Kai B, Yaojun T, Tilmann W, Sommer MOA and Sang Yup L# ‘Dissemination of antibiotic resistance genes from antibiotic producers to pathogens’ (2017) Nature Communications – DOI:10.1038/ncomms15784 – Download link
• Hickman RA, Munck C and Sommer MOA# ‘Time-Resolved Tracking of Mutations Reveals Diverse Allele Dynamics during Escherichia coli Antimicrobial Adaptive Evolution to Single Drugs and Drug Pairs’ (2017) Frontiers in Microbiology – DOI:10.3389/fmicb.2017.00893 – Download link
• Jahn LH Munck C, Ellabaan MMH and Sommer MOA# ‘Adaptive Laboratory Evolution of Antibiotic Resistance Using Different Selection Regimes Lead to Similar Phenotypes and Geonotypes’ (2017) Frontiers in Microbiology – DOI:10.3389/fmicb.2017.00816 – Download link
• Porse A, Gumpert H, Kubicek-Sutherland, JZ, Krami N, Adlerberth I, Wold AE, Andersson DI and Sommer MOA# ‘Genome Dynamics of Escherichia coli during Antibiotic Treatment: Transfer, Loss and Persistance of Genetic Elements In situ of the Infant Gut’ (2017) Frontiers in Cellular and Infection Microbiology – DOI:10.3389/fcimb.2017.00126 – Download link
• Sommer MOA ‘PROMYS – Pogramming synthetic networks for bio-based production of value chemical – FP7 project’ (2017) Impact – DOI:10.21820/23987073.2017.3.45 – Download link
• van der Helm e, Imamovic L, Ellabaan MMH, van Schaik W, Koza A and Sommer MOA# ‘Rapid resistome mapping using nanopore sequencing’ (2017) Nucleic Acids Research, DOI:10.1093/nar/gkw1328 – Download link
• Munck, C., Ellabaan, M.M.H., Klausen, M.S., Sommer MOA ‘The resistome of important human pathogens’ (2017) bioRxiv – DOI:10.1101/140194 – Download link
• Genee HJ, Bali AP, Petersen SD, Sielder S, Bonde MT, Gronenberg LS, Kristensen M, Harrison SJ, Sommer MOA# ‘Functional mining of transporters using synthetic selections’ (2016) Nature Chemical Biology – DOI: 10.1038/nchembio.2189 – Download link
• Moeller TSB, Overgaard M, Nielsen SS, Bortolaia V, Sommer MOA, Guardabassi L, Olsen JE ‘Relation between tetR and tetA expression in tetracycline resistant Escherichia coli’ (2016) BMC Microbiology – DOI: 10.1186/s12866-016-0649-z – Download link
• Versluis D, de Evgrafov MCR, Sommer MOA, Sipkema D, Smidt H and van Passe MWS ‘Sponge Microbiota Are a Reservoir of Funtional Antibiotic Resistance Genes’ (2016) Frontiers in Microbiology, DOI:10.3389/fmicb.2016.01848 – Download link
• Plichta DR, Juncker AS, Bertalan M, Rettedal E, Gautier L, Varela E, Manichanh C, Fouqueray C, Levenez F, Nielsen T, Doré J, Machado AMD, Rodriguez de Evgrafov MC, Hansen T, Jørgensen T, Bork P, Guarner F, Pedersen O, Metagenomics of the Human Intestinal Tract (MetaHIT), Consortium, Sommer MOA, S. Ehrlich D, Sicheritz-Pontén T, Brunak S* and Nielsen HB* ‘Transcriptional interactions suggest niche segregation among microorganisms in the human gut’ (2016) Nature Microbiology – article 16152 – DOI:10.1038/nmicrobiol.2016.152 – Download link
• Elison M, Vigsnaes LK, Krogsgaard LR, Rasmussen J, Sørensen N, McConnell B, Hennet T, Sommer MOA and Bytzer P* ‘Oral supplementation of healthy adults with 2′-O-fucosyllactose and lacto-N-neotetraose is well tolerated and shifts the intestinal microbiota’ (2016) British Journal of Nutrition – 116, 1356-1368 – DOI:10.1017/S0007114516003354 – Download link
• Porse A, Schoenning K, Munck C, Sommer MOA# ‘Survival and evolution of a large multidrug reistance plasmid in new clinical bacterial hosts’ (2016) Molecular Biology and Evolution – DOI:10.1093/molbev/msw163 – Download link
• Moeller TSB, Rau MH, Bonde CS, Sommer MOA, Guardabassi L, Olsen JE# ‘Adaptive responses to cefotaxime treatment in ESBL-producing Escherichia coli and the possible use of significantly regulated pathways as novel secondary targets’ (2016) Journal of Antimicrobial Chemotherapy – 71, 9, p. 2449-2459 11 p – DOI:10.1093/jac/dkw198 – Download link
• Rugbjerg P, Genee HJ, Jensen K, Sarup-Lytzen K, Sommer MOA# ‘Molecular Buffers Permit Sensitivity Tuning and Inversion of Riboswitch Signals’ (2016) ACS SyntheticBiology – DOI:10.1021/acssynbio.5b00213 – Download link
• Sommer MOA, Suess B ‘(Meta-)genome mining for new ribo-regulators’ (2016) Science – 352 P: 144-145 – DOI: 10.1126/science.aaf6189 – Download link
• Sommer MOA ‘Voices of Biotech’ (2016) Nature Biotechnology – V. 34, No 3, P: 273 – DOI: 10.1038/nbt.3502 – Download link
• Bonde MT, Pedersen M, Klausen MS, Jensen SI,Wulff T, Harrison S, Nielsen AT, Herrgaard MJ, Sommer MOA ‘Predictable tuning of protein expression in bacteria’ (2016) Nature Methods – DOI: 10.1038/NMETH.3727 – Download link
• Krueger AS, Munck C, Dantas G, Church GM, Galagan J, Lehar J#, Sommer MOA# ‘Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis’ (2016) PLoS ONE – DOI: 10.1371/journal.pone.0147651 – Download link
• Ronda C, Pedersen LE, Sommer MOA, Toftgaard Nielsen A# ‘CRMAGE: CRISPR Optimized MAGE Recombineering’ (2016) Scientific Reports – DOI: 10.1038/srep19452 – Download link
• Klausen MS, Sommer MOA ‘Principles of Systems Biology, No 2’ (2016) Cell Systems – P. 60 – Download link
• Sommer LM, Imamovic L, Pressler T,Sommer MOA, Molin S, Johansen HK ‘Collateral sensitivity cycling of antibiotics for cystic fibrosis airway infections’ (2017) Journal of Cystic Fibrosis – DOI:10.1016/S1569-1993(16)30365-4 – Download link
• Rugbjerg P, Knuf C, Förster J,Sommer MOA”, ‘Recombination-stable multimeric green flourescent protein for characterization of weak promoter outputs in Saccharomyces cerevisiae’ (2015) FEMS yeast research – fov085 – Download link
• van Der Helm E, Geertz-Hansen HM, Genee HJ, Malla S, Sommer MOA, ‘deFUME: Dynamic exploration of functional metagenomic sequencing data’ (2015) Biomed Central – 10.1186/s13104-015-1281-y – Download link
• Kjeldsen TSB, Sommer MOA, Olsen JE # ‘Extended spectrum β-lactamase-producing Escherichia coli forms filaments as an initial response to cefotaxime treatment’ (2015) Bio Med Central – DOI: 10.1186/s12866-015-0399-3 – Download link
• Lennen R, Nilsson W, Pedersen M, Bonde MT, Luo H, Herrgard M, Sommer MOA# ‘Transient overexpression of DNA adenine methylase enables efficient and mobile genome engineering with reduced off-target effects’ (2015) Nucleic Acids Research – DOI: 10.1093/nar/gkv1090 – Download link
• Sommer MOA, ‘Advancing gut microbiome research using cultivation’ (2015) Current opinion in Microbiology – V. 27 pp 127-132 – Download link
• Munck C, Albertsen M, Telke A, Ellabaan M, Nielsen PH,Sommer MOA#, ‘Limited dissemination of the wastewater treatment plant core resistome’ (2015) Nature Communications – Vol. 6, p. 9452 – Download link
• Rugbjerg P, Myling-Petersen N,Sommer MOA”, ‘Flexible metabolic pathway construction using modular and divisible selection gene regulators’ (2015) Metabolic Engieering – 10.1016/j.ymben.2015.08.004 – Download link
• Rodriguez de Evgrafov M, Gumpert H, Munck C, Thomsen TT, Sommer MOA #, ‘Collateral ressistance and sensitivity modulate evolution of high-level resistance to drug combinations treatment in Staphylococcus aureus ‘ (2015) Molecular Biology and Evolution – – Download link
• Munck C, Gumpert HK, Wallin Al, Wang HH, Sommer MOA #, ‘Prediction of resistance development against drug combications by collateral responses to component drugs’ (2014) Science Translational Medicine – – Download link
• Kjeldsen TSB, Overgaard M, Nielsen SS, Bartolaia V, Jelsbak L, Sommer MOA, Guardabassi L, Olsen JE # ‘CTX-M-1 β-lactamase expression in Escherichia coli is dependent on cefotaxime concentration, growth phase and gene location’ (2015) Journal of Antimicrobial Chemotherapy – DOI: 10.1093/jac/dku332 – Download link
• Rettedal EA, Gumpert H, Sommer MOA ‘Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria’ (2014) Nature Communication – – Download link
• Sandberg TE, Pedersen M, LaCroix RA, Ebrahim A, Bonde M, Herrgaard, MJ, Palsson BO, Sommer MOA, Feist AM# ‘Evolution of Escherichia coli to 42 degrees C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations’ (2014) Molecular Biology and Evolution – – Download link
• Bonde MT, Makransky G, Wandell J, Larsen MV, Morsing M, Jarmer H, Sommer MOA ‘Improving biotech education through gamified laboratory simulations’ (2014) Nature Biotechnology – Vol. 32, issue 7 P 694-697 – Download link
• Machado AMD, Sommer MOA# ‘Human Intestinal Cells Modulate Conjugational Transfer of Multidrug Resistance Plasmids between Clinical Escherichia coli Isolates’ (2014) Plos ONE – Vol. 9, issue 6 e1007339 – Download link
• Bonde MT, Kosuri S, Genee HJ, Sarup-Lytzen K, Church GM, Sommer MO, Wang HH ‘Direct Mutagenesis of Thousands of Genomic Targets using Microarray-derived Oligonucleotides’ (2014) ACS Synth Biol. – 2014 May 23 – Download link
• Genee HJ, Bonde MT, Bagger FO, Jespersen JB Sommer MO, Wernersson R, Olsen LR ‘Software-supported USER cloning strategies for site-directed mutagenesis and DNA assembly’ (2014) ACS Synth Biol. – 2014 May 9 – Download link
• Bonde MT, Klausen MS, Anderson MV, Wallin Al, Wang HH, Sommer MO ‘MODEST: a web-basd design tool for ligonucleotide-mediated genome engineering and recombineering’ (2014) Nucleic Acids Res. – 2014 May 16 – Download link
• Sommer MO ‘Microbiology: Barriers to the spread of resistance’ (2014) Nature – Vol 509 issue 7502 p.. 567-8 – Download link
• Malla M, Sommer MOA# ‘A sustainable route to produce the scytonemin precursor using Escherichia coli’ (2014) Green Chem. – Vol. 16 p 3255-3265 – Download link
• Dantas G, Sommer MOA ‘How to Fight Back Against Antibiotic Resistance’ (2014) American Scientist – Vol. 102, P 42-51 – Download link
• Marvig RL, Jochumsen N, Johansen NK, Høiby N, Molin S, Sommer MO ‘Draft Genome Sequences of Pseudomonas aeruginosa B3 Strains isolated from a Cystic Fibrosis Patient Undergoing Antibiotic Chemotherapy’ (2013) Genome Announc. – Vol. 1, Issue 5, p. e00804-13 – Download link
• Imamovic L & Sommer MOA# ‘Use of Collateral Sensitivity Networks to Design Drug Cycling Protocols that Avoid Resistance Development’ (2013) Science Translational Medicine – Vol. 5, Issue 204, p. 204ra132 – Download link
• Dantas G, Sommer MOA, Degnan PH, Goodman AL ‘Experimental Approaches for Defining Functional Roles of Microbes in the Human Gut’ (2013) Annual Review of Microbiology – Vol. 67: 459-475 – Download link
• Dantas G, Sommer MO ‘Context matters – The complex interplay between resistome genotypes and resistance phenotypes’ (2012) Curr Opin Microbiol. – Vol. 5, Issue 5, p. 577-82 – Download link
• Forsberg KJ*, Reyes A*, Wang B, Selleck EM, Sommer MOA#, Dantas G# ‘The shared antibiotic resistome of soil bacteria and human pathogens’ (2012) Science – 337:1107-1111. – Download link
• Dantas G#, Sommer MOA#, ‘Ecological and clinical consequences of antibiotic subsistence by environmental microbes’ (2012) in Antimicrobial Resistance in the Environment Eds. P. Keen and M Monforts. Wiley-VCH – Download link
• Sommer MOA#, Dantas G#, ‘Antibiotics and the resistant microbiome’ (2011) Current Opinion in Microbiology – doi:10.1016/j.mib.2011.07.005 – Download link
• Moore AM*, Munck C*, Sommer MO#, Dantas G.#, ‘Functional metagenomic investigations of the human intestinal microbiota’ (2011) Frontiers Microbiology 2:118 – Download link
• Stojanoff V, Jakoncic J, Oren DA, Nagarajan V, Poulsen JCN, Adams-Cioaba MA, Bergfors T, Sommer MOA#, ‘From screen to structure with a harvestable microfluidic device’ (2011) Acta Cryst. F67:971-975 – Download link
• Yang L*, Jelsbak L*, Marvig RL, Damkiær S, Workman CT, Rau MH, Hansen SK, Folkesson A, Johansen HK, Ciofu O, Høiby N, Sommer MOA, Molin S, ‘Evolutionary dynamics of bacteria in a human host environment’ (2011) Proceedings of the National Academy of Science USA 108:7481-7486. – Download link
• Sommer Mo, Church GM, Dantas G, ‘The human microbiome harbours a diverse reservoir of antibiotic resistance genes’ (2010) Virulence, Vol. 1, Issue 4, p. 299-303 – Download link
• Sommer MOA#, Church GM, Dantas G.#, ‘A functional metagenomic approach for expanding the synthetic biology toolbox for biomass conversion’ (2010). Nature/EMBO Molecular Systems Biology 6:360 – Download link
• Sommer MOA*#, Dantas G*#, Church GM. ‘Metagenomic functional characterization of the antibiotic resistance reservoir of human microbiomes’ (2009). Science, 325:1128-31 – Download link
• Dantas G*, Sommer MOA*, Oluwasegun R, Church GM#. ‘Bacteria Subsisting on Antibiotics’ (2008) Science 320:100-103 * Denotes equal contribution – Download link
• Sommer MOA, Larsen S#. ‘Crystallizing proteins on the basis of their precipitation diagrams determined using a microfluidic formulator’ (2005) Journal of Synchrotron Radiation 12:779-785 – Download link
• Hansen, C.L., Sommer, M.O.A., Self, K., Berger, J. and Quake, S.R.: ‘Micro-crystallization’ in Protein Crystallization in Drug Discovery Edited by Babine and Abdel-Meguid, (2004) Wiley-VCH
• Hansen, C.L., Sommer, M.O.A. and Quake, S.R.: ‘Systematic Investigation of Protein Phase Behavior with a Microfluidic Formulator’. (2004) Proceedings of the National Academy of Science USA 101:14431-14436. – Download link